1 Introduction | 2 A basic daily_response example | 3 Default plot and ggplot-based modifications | 3.1 Polish the default plot with ggplot2 | 3.2 Additional common modifications | 4 Create a similar plot from scratch | 5 Summary
Package: dendroTools 1.2.17
dendroTools: Linear and Nonlinear Methods for Analyzing Daily and Monthly Dendroclimatological Data
Provides novel dendroclimatological methods, primarily used by the Tree-ring research community. There are four core functions. The first one is daily_response(), which finds the optimal sequence of days that are related to one or more tree-ring proxy records. Similar function is daily_response_seascorr(), which implements partial correlations in the analysis of daily response functions. For the enthusiast of monthly data, there is monthly_response() function. The last core function is compare_methods(), which effectively compares several linear and nonlinear regression algorithms on the task of climate reconstruction.
Authors:
dendroTools_1.2.17.tar.gz
dendroTools_1.2.17.zip(r-4.7-any)dendroTools_1.2.17.zip(r-4.6-any)dendroTools_1.2.17.zip(r-4.5-any)
dendroTools_1.2.17.tgz(r-4.6-any)dendroTools_1.2.17.tgz(r-4.5-any)
dendroTools_1.2.17.tar.gz(r-4.7-any)dendroTools_1.2.17.tar.gz(r-4.6-any)
dendroTools_1.2.17.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
dendroTools/json (API)
| # Install 'dendroTools' in R: |
| install.packages('dendroTools', repos = c('https://jernejjevsenak.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/jernejjevsenak/dendrotools/issues
Datasets:
- data_MVA - Mean vessel area example proxy from 2012 - 1940
- data_TRW - Tree-ring width (TRW) example proxy from 1981 - 1757
- data_TRW_1 - Tree-ring width (TRW) data from 2012 - 1961
- dataset_MVA - MVA and mean April temperature
- dataset_MVA_individual - Example of dataset with individual chronologies of MVA and mean April temperature
- dataset_TRW - TRW and mean June - July temperature from Albania
- dataset_TRW_complete - The complete dataset of standardized tree-ring chronology from Albania
- example_dataset_1 - Example of dataset as required for compare_methods
- example_proxies_1 - Tree-ring example proxies 1 from 2015 - 1961
- example_proxies_individual - Example of dataset with individual chronologies of MVA.
- KRE_daily_temperatures - Daily mean temperatures for Kredarica (Alps in Slovenia) from 2017 - 1955
- LJ_daily_precipitation - Daily precipitation for Ljubljana from 2017 - 1900
- LJ_daily_temperatures - Daily mean temperatures for Ljubljana from 2016 - 1930
- LJ_monthly_precipitation - Monthly sums of precipitation for Ljubljana from 2018 - 1900. Tidy format.
- LJ_monthly_temperatures - Monthly mean air temperatures for Ljubljana from 2015 - 1900
- swit272 - Standardised tree-ring width chronology swit272, Larix decidua Mill.
- swit272_daily_precipitation - Daily precipitation for swit272 chronology
- swit272_daily_temperatures - Daily temperatures for swit272 chronology
Last updated from:86556c1d48. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 225 | ||
| source / vignettes | OK | 281 | ||
| linux-release-x86_64 | OK | 223 | ||
| macos-release-arm64 | OK | 238 | ||
| macos-oldrel-arm64 | OK | 203 | ||
| windows-devel-x86_64 | OK | 181 | ||
| windows-release-x86_64 | OK | 162 | ||
| windows-oldrel-x86_64 | OK | 207 | ||
| wasm-release | OK | 147 |
Exports:boot_f_brnnboot_f_corboot_f_lmboot_f_pcorcalculate_metricscompare_methodscount_onescritical_rdaily_responsedaily_response_seascorrdata_transformglimpse_daily_datamonthly_responsemonthly_response_seascorrplot_extremeplot_heatmapround_dfround2smooth_matrixyears_to_rownames
Dependencies:askpassbase64encbitopsbootbrnnbslibcachemcaToolsclicpp11crosstalkCubistcurldata.tabledigestdplRdplyrevaluatefarverfastmapfontawesomeFormulafsgenericsggplot2glueGPArotationgplotsgridExtragswgtablegtoolshighrhtmltoolshtmlwidgetshttrisobandjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevallifecyclelme4lubridatemagrittrMASSMatrixmatrixStatsmemoisemimeminqaMLmetricsmnormtnlmenloptroceopensslotelpillarpkgconfigplotlyplyrpngpromisespsychpurrrR.methodsS3R.ooR.utilsR6randomForestrappdirsrbibutilsRColorBrewerRcppRcppEigenRdpackreformulasreshape2rlangrmarkdownROCRS7sassscalessignalstringistringrsystibbletidyrtidyselecttimechangetinytextruncnormutf8vctrsviridisviridisLitewithrxfunXMLyaml
Modify plots using ggplot
Last update: 2026-01-11
Started: 2026-01-11
Examples with daily climate data
1 Introduction | 2 Transformation and quick preview of daily data | 3 The daily_response() in action | 3.1 An example of analysing the relationship between Mean Vessel Area (MVA) tree-ring parameter and daily temperature data with fixed window approach | 3.2 Analysis of climate-growth correlations only for a subset of selected time interval | 4 An example with multiple tree-ring proxies | 5 An example of climate reconstruction | 6 The calculation of partial correlations with daily_response_seascorr()
Last update: 2024-04-26
Started: 2020-10-29
Compare different regression methods
1. The compare_methods() | 2. Basic example | 3. Principal component analysis in combination with the compare_methods() | 4. Example of multiproxy analysis | 5. Example of climate reconstruction | 6. Tuning the machine learning parameters
Last update: 2022-05-04
Started: 2020-10-29
